Research progress on functional genomics of important tapeworms

Abstract

Abstract:

Taeniasis is a group of parasitic diseases that seriously impairs human health and livestock husbandry. The control measures for the disease still need improvement. In recent years, molecular biology technology has emerged as an effective means to fight against taeniasis. Therefore, it is of significance to study the functions of tapeworm genes. This article introduces several techniques commonly used in functional genomics research, and reviews the progress of some important functional genomics of tapeworms in recent years.

Key words: Taenia, Gene, Functional genomics, Bioinformatics

CLC Number:

R383.3

Xiang LI, Bo LUO, Bi-ying ZHOU. Research progress on functional genomics of important tapeworms[J]. CHINESE JOURNAL OF PARASITOLOGY AND PARASITIC DISEASES, 2018, 36(5): 520-525.

References 52

[1]	Mitani S.Comprehensive functional genomics using Caenorhabditis elegans as a model organism[J]. Proc Jpn Acad Ser B Phys Biol Sci, 2017, 93(8): 561-577.
[2]	Gibney PA, Hickman MJ, Bradley PH, et al. Phylogenetic portrait of the Saccharomyces cerevisiae functional genome[J]. G3-Genes Genom Genet, 2013, 3(8): 1335-1340.
[3]	Fontenelle MR, Santana MF, Cnossen A, et al. Differential expression of genes during the interaction between Colletotrichum lindemuthianum and Phaseolus vulgaris[J]. Eur J Plant Pathol, 2017, 147(3): 653-670.
[4]	Yu G, Liu Y, Cao S, et al. Suppressive subtractive hybridization reveals different gene expression between high and low virulence strains of Cladosporium cladosporioides[J]. Microb Pathog, 2016, 100: 276-284.
[5]	Sun ZB, Li SD, Zhong ZM, et al. A perilipin gene from Clonostachys rosea f. catenulata HL-1-1 is related to sclerotial parasitism[J]. Int J Mol Sci, 2015, 16(3): 5347-5362.
[6]	Sahebi M, Hanafi MM, Azizi P, et al. Suppression subtractive hybridization versus next-generation sequencing in plant genetic engineering: challenges and perspectives[J]. Mol Biotechnol, 2015, 57(10): 880-903.
[7]	Ahmed I AM, Eltayeb MM, Habora MEE, et al. Identification of the key genes involved in the degradation of homocholine by Pseudomonas sp. strain A9 by using suppression subtractive hybridization[J]. Process Biochem, 2017, 52: 94-105.
[8]	Dhornepollet S, Thélie A, Pollet N.Validation of novel reference genes for RT-qPCR studies of gene expression in Xenopus tropicalis during embryonic and post-embryonic development[J]. Dev Dyn, 2013, 242(6): 709-717.
[9]	Biswas P, Majumdar U, Ghosh S.Analysis of reverse transcribed mRNA using PCR and polyacrylamide gel electrophoresis[J]. Methods Mol Biol, 2018: 73-87.
[10]	Kumaresan V, Bhatt P, Palanisamy R, et al. A murrel cysteine protease, cathepsin L: bioinformatics characterization, gene expression and proteolytic activity[J]. Biologia, 2014, 69(3): 395-406.
[11]	Chaurasia MK, Nizam F, Ravichandran G, et al. Molecular importance of prawn large heat shock proteins 60, 70 and 90[J]. Fish Shellfish Immunl, 2016, 48: 228-238.
[12]	谭程宁, 黄靖涵, 李春红, 等. 蛋白质组学在细胞信号通路研究中的应用[J]. 中国药科大学学报, 2017, 48(4): 384-395.
[13]	Han J, Peng G, Zhao S, et al. iTRAQ-based proteomic analysis of LI-F type peptides produced by Paenibacillus polymyxa, JSa-9 mode of action against Bacillus cereus[J]. J Proteomics, 2017, 150: 130-140.
[14]	Li Y, Gong Y, Wu X, et al. Quantitative proteomic analysis of deciduous molars during cap to bell transition in miniature pig[J]. J Proteomics, 2018, 172: 57-67.
[15]	Nakayama N, Bando Y, Fukuda T, et al. Developments of mass spectrometry-based technologies for effective drug development linked with clinical proteomes[J]. Drug Metab Pharmacokinet, 2016, 31(1): 3-11.
[16]	Airs PM, Bartholomay LC.RNA interference for mosquito and mosquito-borne disease control[J]. Insects, 2017, 8(1): 4.
[17]	Liao Z, Wang X, Lin D, et al. Construction and identification of the RNAi recombinant lentiviral vector targeting human DEPDC7 gene[J]. Interdiscip Sci Comput Life Sci, 2017, 9(3): 350-356.
[18]	Devincenzo J, Lambkin-Williams R, Wilkinson T, et al. A randomized, double-blind, placebo-controlled study of an RNAi-based therapy directed against respiratory syncytial virus[J]. Proc Nati Acad Sci USA, 2010, 107(19): 8800-8805.
[19]	Xi HQ, Zhang KC, Li JY, et al. RNAi-mediated inhibition of Lgr5 leads to decreased angiogenesis in gastric cancer[J]. Oncotarget, 2017, 8(19): 31581-31591.
[20]	孔金明. 生物芯片技术在食品安全领域的应用综述[J]. 郑州轻工业学院学报(自然科学版), 2013, 28(1): 1-6.
[21]	Dou M, Sanjay ST, Dominguez DC, et al. Multiplexed instrument-free meningitis diagnosis on a polymer/ paper hybrid microfluidic biochip[J]. Biosens Bioelectron, 2017, 87: 865-873.
[22]	Shen J, Guan Y, Zhang J, et al. Application of microarray technology for the detection of intracranial bacterial infection[J]. Exp Ther Med, 2014, 7(2): 496-500.
[23]	Sadik CD, Pas HH, Bohlmann MK, et al. Value of biochip technology in the serological diagnosis of pemphigoid gestationis[J]. Acta Dermato-venereologica, 2017, 96(7): 128-130.
[24]	Tsai IJ, Zarowiecki M, Holroyd N, et al. sThe genomes of four tapeworm species reveal adaptations to parasitism[J]. Nat, 2013, 496(7443): 57-63.
[25]	Wang S, Wang S, Luo Y, et al. Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host[J]. Nat Commun, 2016, 7: 12845.
[26]	Diaz-Masmela Y, Fragoso G, Ambrosio JR, et al. Immunodiagnosis of porcine cysticercosis: identification of candidate antigens through immunoproteomics[J]. Vet J, 2013, 198(3): 656-660.
[27]	Hou J, Luo X, Shuai W, et al. Sequence analysis and molecular characterization of wnt4 gene in metacestodes of Taenia solium[J]. Korean J Parasitol, 2014, 52(2): 163-168.
[28]	王哲, 王丹, 李巍, 等. 体外人工肠液激活与未激活的猪带绦虫六钩蚴差异蛋白质组比较[J]. 中国预防兽医学报, 2011, 33(6): 435-438.
[29]	Ai L, Xu MJ, Chen MX, et al. sCharacterization of microRNAs in Taenia saginata of zoonotic significance by Solexa deep sequencing and bioinformatics analysis[J]. Parasitol Res, 2012, 110(6): 2373-2378.
[30]	González LM, Montero E, Sciutto E, et al. Differential diagnosis of Taenia saginata and Taenia solium infections: from DNA probes to polymerase chain reaction[J]. Trans R Soc Trop Med Hyg, 2002, 96(1): S243-S250.
[31]	Hernández M, Gonzalez LM, Fleury A, et al. Neurocysticercosis: detection of Taenia solium DNA in human cerebrospinal fluid using a semi-nested PCR based on HDP2[J]. Ann Trop Med Parasitol, 2008, 102(4): 317-323.
[32]	González LM, Bonay P, Benitez L, et al. Molecular and functional characterization of a Taenia, adhesion gene family (TAF) encoding potential protective antigens of Taenia saginata, oncospheres[J]. Parasitol Res, 2007, 100(3): 519-528.
[33]	Huang J, Xu CH, Bao HE, et al. Construction and ETS analysis of full-length cDNA library of adult Taenia asiatica[J]. J Trop Med, 2007, 7(2): 116-118.
[34]	Huang J, Xu CH, Bao HE, et al. Cloning and informatics analysis of calcineurin B gene from Taenia asiatica[J]. J Path Biol, 2008, 3(1): 23-26.
[35]	黄江, 吴璇, 胡旭初, 等. 亚洲牛带绦虫钙调神经磷酸酶B基因的原核表达和免疫学分析[J]. 中山大学学报(医学科学版), 2008, 29(4): 398-401.
[36]	黄江, 王宇, 张爱华. 亚洲带绦虫六钩蚴Ta18基因克隆及生物信息学分析[J]. 中国公共卫生, 2013, 29(3): 328-331.
[37]	Wen HL, Zi GQ, Zhang NZ, et al. Preliminary analysis of Taenia multiceps metacestode antigens by two-dimensional electrophoresis[J]. Iran J Parasitol, 2014, 9(4): 568-573.
[38]	Ying S, Yu W, Xing H, et al. Characterization of glutathione S-transferase and its immunodiagnostic potential for detecting Taenia multiceps[J]. Vet Parasitol, 2017, 242: 31-37.
[39]	张少华, 骆学农, 李雪强, 等. 豆状带绦虫肌动蛋白基因克隆及其作为分子内参的应用[J]. 中国寄生虫学与寄生虫病杂志, 2016, 34(1): 32-37.
[40]	Zhang W, Li J, Hong Y, et al. A gene family from Echinococcus granulosus differentially expressed in mature adult worms[J]. Mol Biochem Parasitol, 2003, 126(1): 25-33.
[41]	赵莉, 石保新, 李军, 等. 细粒棘球蚴原头蚴包囊和原头蚴成虫抑制差减杂交文库中差异表达基因的筛选及分析[J]. 畜牧兽医学报, 2015, 46(7): 1215-1223.
[42]	Hu D, Song X, Xie Y, et al. Molecular insights into a tetraspanin in the hydatid tapeworm Echinococcus granulosus[J]. Parasites Vectors, 2015, 8(1): 311.
[43]	Sulima A, Bień J, Savijoki K, et al. Identification of immunogenic proteins of the cysticercoid of Hymenolepis diminuta[J]. Parasites Vectors, 2017, 10(1): 577.
[44]	Bo X, Zhao W, Zhang H, et al. sGene expression profiling of in Moniezia expansa at different developmental proglottids using cDNA microarray[J]. Mol Biol Rep, 2012, 39(4): 4499-4507.
[45]	Hu DD, Cui J, Wang L, et al. Immunoproteomic analysis of the excretory-secretory proteins from Spirometra mansoni sparganum[J]. Iran J Parasitol, 2013, 8(3): 408-416.
[46]	Liu LN, Zhang X, Jiang P, et al. Serodiagnosis of sparganosis by ELISA using recombinant cysteine protease of Spirometra erinaceieuropaei spargana[J]. Parasitol Res, 2015, 114(2): 753-757.
[47]	Lu YJ, Lu G, Shi DZ, et al. Bioinformatic analysis for structure and function of TCTP from Spirometra mansoni[J]. Asian Pac J Trop Med, 2013, 6(9): 709-712.
[48]	梁培, 尹飞飞, 夏乾峰, 等. 曼氏迭宫绦虫翻译控制肿瘤蛋白(TCTP)的真核表达、虫体组织和亚细胞定位及免疫保护效果评价[J]. 中国病原生物学杂志, 2017, 12(7): 647-650.
[49]	Cheng T, Liu GH, Song HQ, et al. The complete mitochondrial genome of the dwarf tapeworm Hymenolepis nana-a neglected zoonotic helminth[J]. Parasitol Res, 2016, 115(3): 1253-1262.
[50]	Gannavaram S, Torcivia J, Gasparyan L, et al. Whole genome sequencing of live attenuated Leishmania donovani parasites reveals novel biomarkers of attenuation and enables product characterization[J]. Sci Rep, 2017, 7(1): 4718.
[51]	Sun MM, Han L, Zhang FK, et al. Characterization of the complete mitochondrial genome of Marshallagia marshalli and phylogenetic implications for the superfamily Trichostrongyloidea[J]. Parasitol Res, 2017, 117(1): 1-7.
[52]	Bennuru S, O′Connell EM, Drame PM, et al. Mining filarial genomes for diagnostic and therapeutic targets[J]. Trends Parasitol, 2018, 34(1): 80.