收稿日期: 2024-11-14
修回日期: 2025-02-02
网络出版日期: 2025-05-21
基金资助
贵州省科技计划(Qiankehe support[2022]general 178);贵州省传染病预防与控制人才基地科研团队-媒介生物及相关传染病监测预警中心(RCJD2107);贵州省微生物组与传染性疾病防控重点实验室(ZDSYS[2023]004)
Investigation of bacterial community diversity in parasitic ticks from three autonomous prefectures in Guizhou Province
Received date: 2024-11-14
Revised date: 2025-02-02
Online published: 2025-05-21
Supported by
Guizhou Provincial Science and Technology Plan Project(Qiankehe support[2022]general 178);Scientific Research Team of the Infectious Disease Prevention and Control Talent Base in Guizhou Province-Vector Biology and Related Infectious Disease Monitoring and Early Warning Center(RCJD2107);Guizhou Provincial Key Laboratory of Microbiology and Infectious Disease Prevention and Control(ZDSYS[2023]004)
目的 了解贵州省3个自治州内蜱的种类和蜱携带微生物群的多样性。 方法 2019年4月和2020年7月,在贵州省黔东南苗族侗族自治州(以下简称黔东南)、黔南布依族苗族自治州(以下简称黔南)和黔西南布依族苗族自治州(以下简称黔西南)采集牛、羊和鼠体表的寄生蜱并进行形态学鉴定。按采集地区和蜱种将蜱分成6组,提取DNA后进行16S rDNA高通量测序。测序结果经操作分类单元(OTU)聚类分析后与核糖体数据库进行比对获得物种注释,进行细菌群落组成分析和α多样性分析。根据β多样性距离矩阵进行层级聚类,采用布雷柯蒂斯算法构建样品聚类树。采用R 3.6.3软件进行非度量多维尺度(NMDS)和组间相似性分析。 结果 共采集蜱1 463只,包括1 227只微小扇头蜱(83.87%)、208只长角血蜱(14.22%)、25只粒形硬蜱(1.71%)和3只褐黄血蜱(0.20%)。在黔东南、黔南和黔西南分别采集蜱220、1 039和204只,占采集总数的15.04%、71.02%、13.94%。高通量测序共产生1 682个OTU。α多样性分析显示,黔东南长角血蜱的香农指数、Chao1指数、Ace指数和均匀度指数均较高,分别为4.868、568.481、567.479和0.770。细菌群落鉴定共注释到29个菌门、70个菌纲、118个菌目、245个菌科和503个菌属,变形菌门、α-变形菌纲、立克次体目、立克次体科和立克次体属分别为各分类水平的优势菌,平均相对丰度分别为75.52%、57.70%、52.47%、50.88%和50.88%。微小扇头蜱携带的菌属以立克次体属(89.45%)和柯克斯体属(2.82%)为主,长角血蜱以立克次体属(18.06%)和假单胞菌属(11.98%)为主,粒形硬蜱以螺原体属(33.19%)和葡萄球菌属(22.22%)为主。黔东南、黔南和黔西南蜱携带的优势菌属均为立克次体属,平均相对丰度分别46.96%、60.20%和45.47%。样品聚类树显示,3个地区的微小扇头蜱样品与1份黔南的长角血蜱样品聚为一支,余下的长角血蜱样品聚为一支,黔西南的3份粒形硬蜱样品聚为一支。NMDS和组间相似性分析结果显示,6组样品的细菌群落组成不同(R = 0.599,P < 0.01)。 结论 贵州省3个自治州的蜱携细菌群落组成丰富,立克次体属为优势菌属。不同蜱种的细菌群落组成不同。
管毓威 , 向昱龙 , 周敬祝 , 罗小龙 , 孔雪雪 , 张燕 , 胡勇 , 梁文琴 . 贵州省3个自治州寄生蜱细菌群落多样性研究[J]. 中国寄生虫学与寄生虫病杂志, 2025 , 43(3) : 370 -376 . DOI: 10.12140/j.issn.1000-7423.2025.03.011
Objective To investigate the species and microbial diversity of ticks from three autonomous prefectures in Guizhou Province. Methods In April 2019 and July 2020, parasitic ticks on the body surfaces of cattle, sheep and rodents were collected in Qiandongnan Miao and Dong Autonomous Prefecture (referred to as Qiandongnan), Qiannan Buyi and Miao Autonomous Prefecture (referred to as Qiannan) and Qianxinan Buyi and Miao Autonomous Prefecture (referred to as Qianxinan) in Guizhou Province, followed by morphological identification. The ticks were divided into 6 groups based on the collection regions and tick species. After DNA extraction, 16S rDNA high-throughput sequencing was performed. The sequencing results were analyzed by operational taxonomic unit (OTU) classification cluster and compared with the ribosomal database to obtain species annotations, enabling bacterial community composition analysis and α diversity analysis. Hierarchical clustering was conducted based on the β diversity distance matrix and a sample clustering tree was constructed using the Bray-Curtis algorithm. Non-metric multidimensional scale (NMDS) analysis and inter-group similarity analysis were performed using R 3.6.3 software. Results A total of 1 463 ticks were collected, including 1 227 Rhipicephalus microplus (83.87%), 208 Haemaphysalis longicornis (14.22%), 25 Ixodes granulatus (1.71%) and 3 Haemaphysalis flava (0.20%). In Qiandongnan, Qiannan and Qianxinan, 220, 1 039 and 204 ticks were collected respectively, accounting for 15.04%, 71.02% and 13.94%. A total of 1 682 OTUs were generated. α diversity analysis revealed that H. longicornis from Qiandongnan exhibited relatively high Shannon index, Chao1 index, Ace index and evenness index values of 4.868, 568.481, 567.479 and 0.770, respectively. Bacterial community identification annotated a total of 29 phyla, 70 classes, 118 orders, 245 families and 503 genera. Proteobacteria, Alphaproteobacteria, Rickettsiales, Rickettsiaceae and Rickettsia emerged as the dominant taxa at their respective taxonomic levels, with average relative abundances of 75.52%, 57.70%, 52.47%, 50.88% and 50.88%, respectively. The bacterial genera carried by R. microplus were predominantly Rickettsia (89.45%) and Coxiella (2.82%), while H. longicornis mainly harbored Rickettsia (18.06%) and Pseudomonas (11.98%), and I. granulatus primarily carried Spiroplasma (33.19%) and Staphylococcus (22.22%). The dominant bacterial genus in ticks from Qiandongnan, Qiannan, and Qianxinan was Rickettsia, with average relative abundances of 46.96%, 60.20% and 45.47%, respectively. The sample clustering tree demonstrated that R. microplus samples from 3 regions clustered together with a H. longicornis sample from Qiannan, while the remaining H. longicornis samples formed a separate cluster, and 3 I. granulatus samples from Qianxinan clustered independently. NMDS and inter-group similarity analysis indicated distinct bacterial community compositions among the 6 sample groups (R = 0.599, P < 0.01). Conclusion The bacterial communities carried by ticks in the three autonomous prefectures of Guizhou Province exhibited rich diversity, with Rickettsia being the dominant genus. Additionally, the bacterial community compositions differed among various tick species.
| [1] | Moraga-Fernández A, Muñoz-Hernández C, Sánchez-Sánchez M, et al. Exploring the diversity of tick-borne pathogens: The case of bacteria (Anaplasma, Rickettsia, Coxiella and Borrelia) protozoa (Babesia and Theileria) and viruses (orthonairovirus, tick-borne encephalitis virus and louping ill virus) in the European Continent[J]. Vet Microbiol, 2023, 286: 109892. |
| [2] | 邵中军. 我国重要蜱传疾病及传播媒介研究概述[J]. 中华卫生杀虫药械, 2021, 27(4): 293-299. |
| Shao ZJ. Overview of serious tick-borne diseases and vector ticks in China[J]. Chin J Hyg Insectic Equip, 2021, 27(4): 293-299. (in Chinese) | |
| [3] | 向昱龙, 周敬祝, 刘英, 等. 贵州省部分地区蜱及其携带细菌调查[J]. 中国媒介生物学及控制杂志, 2022, 33(1): 148-152. |
| Xiang YL, Zhou JZ, Liu Y, et al. An investigation of ticks and tick-borne bacteria in some areas of Guizhou Province, China[J]. Chin J Vector Biol Control, 2022, 33(1): 148-152. (in Chinese) | |
| [4] | Beard D, Stannard HJ, Old JM. Parasites of wombats (Family Vombatidae), with a focus on ticks and tick-borne pathogens[J]. Parasitol Res, 2021, 120(2): 395-409. |
| [5] | Chauvin A, Moreau E, Bonnet S, et al. Babesia and its hosts: Adaptation to long-lasting interactions as a way to achieve efficient transmission[J]. Vet Res, 2009, 40(2): 37. |
| [6] | Pollet T, Sprong H, Lejal E, et al. The scale affects our view on the identification and distribution of microbial communities in ticks[J]. Parasit Vectors, 2020, 13(1): 36. |
| [7] | Greay TL, Gofton AW, Paparini A, et al. Recent insights into the tick microbiome gained through next-generation sequencing[J]. Parasit Vectors, 2018, 11(1): 12. |
| [8] | Duron O, Morel O, Noël V, et al. Tick-bacteria mutualism depends on B vitamin synthesis pathways[J]. Curr Biol, 2018, 28(12): 1896-1902.e5. |
| [9] | Narasimhan S, Rajeevan N, Liu L, et al. Gut microbiota of the tick vector Ixodes scapularis modulate colonization of the Lyme disease spirochete[J]. Cell Host Microbe, 2014, 15(1): 58-71. |
| [10] | Boularias G, Azzag N, Galon C, et al. High-throughput microfluidic real-time PCR for the detection of multiple microorganisms in ixodid cattle ticks in northeast Algeria[J]. Pathogens, 2021, 10(3): 362. |
| [11] | 向昱龙, 周敬祝, 张燕, 等. 贵州省少数民族自治州微小扇头蜱的宏基因组分析[J]. 中国媒介生物学及控制杂志, 2023, 34(3): 319-325. |
| Xiang YL, Zhou JZ, Zhang Y, et al. Metagenomic analysis of Rhipicephalus microplus from minority autonomous prefectures in Guizhou province, China[J]. Chin J Vector Biol Control, 2023, 34(3): 319-325. (in Chinese) | |
| [12] | Jia N, Wang JF, Shi WQ, et al. Large-scale comparative analyses of tick genomes elucidate their genetic diversity and vector capacities[J]. Cell, 2020, 182(5): 1328-1340. |
| [13] | Lu M, Tian JH, Pan XL, et al. Identification of Rickettsia spp., Anaplasma spp., and an Ehrlichia canis-like agent in Rhipicephalus microplus from Southwest and South-Central China[J]. Ticks Tick Borne Dis, 2022, 13(2): 101884. |
| [14] | Gómez GF, Isaza JP, Segura JA, et al. Metatranscriptomic virome assessment of Rhipicephalus microplus from Colombia[J]. Ticks Tick Borne Dis, 2020, 11(5): 101426. |
| [15] | Makenov MT, Toure AH, Korneev MG, et al. Rhipicephalus microplus and its vector-borne haemoparasites in Guinea: Further species expansion in West Africa[J]. Parasitol Res, 2021, 120(5): 1563-1570. |
| [16] | Cardoso ADS, Santos EGG, Lima ADS, et al. Terpenes on Rhipicephalus (boophilus) microplus: Acaricidal activity and acetylcholinesterase inhibition[J]. Vet Parasitol, 2020, 280: 109090. |
| [17] | Maldonado-Ruiz LP, Neupane S, Park Y, et al. The bacterial community of the lone star tick (Amblyomma americanum)[J]. Parasit Vectors, 2021, 14(1): 49. |
| [18] | 张钰, 张科, 刘佳伟, 等. 普氏野马分布区域亚洲璃眼蜱的宏基因组分析与病原体评估[J]. 中国寄生虫学与寄生虫病杂志, 2024, 42(4): 439-446, 453. |
| Zhang Y, Zhang K, Liu JW, et al. Metagenomic analysis and potential assessment of Hyalomma asiaticum in the distribution area of Przewalski’s horses[J]. Chin J Parasitol Parasit Dis, 2024, 42(4): 439-446, 453. (in Chinese) | |
| [19] | Jiao J, Lu ZY, Yu YH, et al. Identification of tick-borne pathogens by metagenomic next-generation sequencing in Dermacentor nuttalli and Ixodes persulcatus in Inner Mongolia, China[J]. Parasit Vectors, 2021, 14(1): 287. |
| [20] | Misra BR, Kumar N, Kant R, et al. Abundance of ticks (Acari : Ixodidae) and presence of Rickettsia and Anaplasma in ticks infesting domestic animals from Northern India[J]. J Med Entomol, 2021, 58(3): 1370-1375. |
| [21] | Xiang LL, Poźniak B, Cheng TY. Bacteriological analysis of saliva from partially or fully engorged female adult Rhipicephalus microplus by next-generation sequencing[J]. Antonie Van Leeuwenhoek, 2017, 110(1): 105-113. |
| [22] | 管毓威, 罗小龙, 周敬祝, 等. 贵州省部分地区微小扇头蜱微生物群落多样性及抗生素抗性基因的宏基因组分析[J]. 中国媒介生物学及控制杂志, 2024, 35(4): 394-400, 439. |
| Guan YW, Luo XL, Zhou JZ, et al. Metagenomic analysis of microbial community diversity and antibiotic resistance genes of Rhipicephalus microplus in some areas of Guizhou Province, China[J]. Chin J Vector Biol Control, 2024, 35(4): 394-400, 439. (in Chinese) | |
| [23] | Xiang YL, Zhou JZ, Yu FX, et al. Characterization of bacterial communities in ticks parasitizing cattle in a touristic location in southwestern China[J]. Exp Appl Acarol, 2023, 90(1/2): 119-135. |
| [24] | Wang Q, Guo WB, Pan YS, et al. Detection of novel spotted fever group Rickettsiae (Rickettsiales : Rickettsiaceae) in ticks (Acari : Ixodidae) in Southwestern China[J]. J Med Entomol, 2021, 58(3): 1363-1369. |
| [25] | Kim JY, Yi MH, Mahdi AAS, et al. iSeq 100 for metagenomic pathogen screening in ticks[J]. Parasit Vectors, 2021, 14(1): 346. |
| [26] | 陈秋, 何贤海, 孟娇, 等. 贵州省罗甸县山羊体表寄生蜱携带柯克斯体属细菌的基因特征分析[J]. 中国媒介生物学及控制杂志, 2024, 35(4): 417-421. |
| Chen Q, He XH, Meng J, et al. Analysis of genetic characteristics of Coxiella carried by parasitic ticks on goat body surface in Luodian County, Guizhou Province, China[J]. Chin J Vector Biol Control, 2024, 35(4): 417-421. (in Chinese) | |
| [27] | 刘子维, 李华锋. 辽宁省营口市长角血蜱携带立克次体和埃立克体调查[J]. 中国媒介生物学及控制杂志, 2024, 35(6): 714-718. |
| Liu ZW, Li HF. Investigation of Rickettsia and Ehrlichia harbored by Haemaphysalis longicornis in Yingkou City, Liaoning Province, China[J]. Chin J Vector Biol Control, 2024, 35(6): 714-718. (in Chinese) | |
| [28] | Tufts DM, Sameroff S, Tagliafierro T, et al. A metagenomic examination of the pathobiome of the invasive tick species, Haemaphysalis longicornis, collected from a New York City borough, USA[J]. Ticks Tick Borne Dis, 2020, 11(6): 101516. |
| [29] | Guizzo MG, Parizi LF, Nunes RD, et al. A Coxiella mutualist symbiont is essential to the development of Rhipicephalus microplus[J]. Sci Rep, 2017, 7(1): 17554. |
| [30] | Qi Y, Ai LL, Zhu CQ, et al. Wild hedgehogs and their parasitic ticks coinfected with multiple tick-borne pathogens in Jiangsu Province, Eastern China[J]. Microbiol Spectr, 2022, 10(5): e0213822. |
| [31] | Li J, Kelly P, Guo WN, et al. Molecular detection of Rickettsia, Hepatozoon, Ehrlichia and SFTSV in goat ticks[J]. Vet Parasitol Reg Stud Reports, 2020, 20: 100407. |
| [32] | Zhang RL, Zhang Q, Yu GF, et al. Metagenomic deep sequencing obtains taxonomic and functional profiles of Haemaphysalis longicornis that vary in response to different developmental stages and sexes[J]. Exp Appl Acarol, 2021, 83(2): 285-300. |
| [33] | Takano A, Ando S, Kishimoto T, et al. Presence of a novel Ehrlichia sp. in Ixodes granulatus found in Okinawa, Japan[J]. Microbiol Immunol, 2009, 53(2): 101-106. |
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