中国寄生虫学与寄生虫病杂志 ›› 2014, Vol. 32 ›› Issue (4): 6-274-279.

• 论著 • 上一篇    下一篇

森林革蜱半饱血雄蜱抑制消减杂交cDNA文库的构建及差异基因的分析

刘琪1,王伟琳2,孟庆峰2,徐展1,崔洁1,刘新欣1,王伟利2 *   

  1. 1 吉林农业大学动物科学技术学院,长春130118;2 吉林出入境检验检疫局,长春130062
  • 出版日期:2014-08-30 发布日期:2014-10-31

Construction of Suppression Subtractive Hybridization cDNA Library of Half-blood Males of Dermacentor silvarum and Analysis of Differentially Expressed Genes

LIU Qi1,WANG Wei-lin2,MENG Qing-feng2,XU Zhan1,CUI Jie1,LIU Xin-xin1,WANG Wei-li2 *   

  1. 1 College of Animal Science and Technology,Jilin Agricultural University,Changchun 130118,China; 2 Jilin Entry-Exit Inspection and Quarantine Bureau,Changchun 130062,China
  • Online:2014-08-30 Published:2014-10-31

摘要: 目的  构建森林革蜱(Dermacentor silvarum)半饱血雄蜱抑制消减杂交cDNA文库,分析差异基因。 方法 以森林革蜱半饱血雄蜱为实验组(tester),未吸血雄蜱为对照组(driver),分别提取总RNA,SMARTER PCR合成双链cDNA,Rsa Ⅰ酶切后连接接头并进行抑制消减杂交。巢式PCR扩增杂交产物,经柱纯化后连接至PMD?鄄18T中,转化大肠埃希菌DH5α感受态细胞,进行蓝白斑筛选,并计算文库滴度和重组率。随机挑选阳性克隆,反向Northern杂交(Northern blotting)和RT-PCR法检测抑制消减杂交cDNA文库的消减效率。随机选取差异基因阳性克隆送测序,利用Blastn和Blastx对测序结果进行核酸种类同源性分析和蛋白种类同源性的比对和功能预测。 结果  电泳结果显示,森林革蜱半饱血雄蜱和未吸血雄蜱的ds cDNA均呈弥散拖影,大小在500 bp以上,经Rsa Ⅰ酶切后,大小在100~1000 bp;接头连接效率大于25%。巢式PCR结果显示,消减的ds cDNA呈聚集条带,大小在250~500 bp。构建的森林革蜱半饱血雄蜱抑制消减杂交cDNA文库的滴度为700 000 pfu/ml,重组率为88.5%(239/270)。反向Northern blotting检测结果显示,当以森林革蜱半饱血雄蜱单链cDNA为探针时,消减文库信号较强;以未吸血雄蜱单链cDNA为探针时,消减文库信号较弱。RT-PCR结果显示,随机选取的8个阳性克隆中,有5个在半饱血状态下表达上扬,抑制消减杂交cDNA文库消减效果较好。115个阳性克隆测序得到87个差异表达序列标签(ESTs),大小为200~800 bp。Blastn分析结果显示,87个序列中,与其他蜱基因有同源性的53个,同源性为70%~98%,与库蚊、甲虫和果蝇等其他昆虫基因有同源性的34个,同源性为32%~65%。Blastx预测结果显示,序列中片段表达的蛋白包括参与吸血和血液消化的不同酶类,主要功能为能量代谢、信号传导和转录调节等。  结论  建立了森林革蜱半饱血雄蜱抑制消减杂交cDNA文库,差异基因的功能预测与蜱的吸血和血液消化等有关。

关键词: 森林革蜱, 抑制消减杂交, cDNA文库, 差异基因

Abstract:   Objective To construct a suppression subtractive hybridization(SSH) cDNA library of half-blood males of Dermacentor silvarum, and analyze the differentially expressed genes. Methods Total RNA was extracted from the half-blood males and unfed males of D. silvarum. cDNA was synthesized following the protocol of SMARTER cDNA synthesis kit. After RsaⅠdigestion, cDNA was ligated to adaptors. The cDNA from the half-blood males was used as the tester, and unfed males as the driver. The SSH library was constructed using TaKaRa PCR-select cDNA subtraction kit. Differentially expressed cDNAs were amplified by nested PCR, cloned into PMD-18T vector, transformed into E. coli DH5α, and the white-blue plaque selection was used to get the positive clones. The titer of SSH library and the recombination efficiency were calculated. Individual colonies were randomly selected from library. Subtractive efficiency of the subtracted cDNA library was examined by reverse Northern blotting and RT-PCR. Positive clones with differentially expressed genes were sequenced. Homology comparison and function prediction were performed by Blastn and Blastx. Results The bands of double-stranded cDNAs from half-blood males and unfed males of D. silvarum were dispersed and longer than 500 bp. After RsaⅠ digestion, the ds cDNA-fragments were 100-1 000 bp. The ligation reaction efficiency of adaptor was more than 25%. Nested PCR showed that the bands of subtracted ds cDNA were gathered, ranging from 250 to 500 bp. The titer of SSH library was 700 000 pfu/ml, and the recombination efficiency was 88.5% (239/270). Reverse Northern hybridization revealed that the clones showed stronger signals in half-blood males cDNA probes than in unfed males cDNA probes. RT-PCR showed that among the eight random selected positive clones, 5 clones were up-expressed under half-blood condition. A total of 87 differentially expressed sequence tags(ESTs, 200-800 bp) were obtained from 115 positive clones. Among the 87 ESTs, 53 ESTs showed sequence similarities to genes from other tick species, and 34 were homologous with genes from other insects. The main biological function of obtained ESTs were related to blood sucking and digestion, such as energy metabolism, signal transduction, and transcription regulation. Conclusion The SSH cDNA library of half-blood male Dermacentor silvarum is constructed. The differential expressed genes are related to blood sucking and digestion.

Key words: Dermacentor silvarum, Suppression subtractive hybridization, cDNA library, Differentially expressed gene