收稿日期: 2024-04-07
修回日期: 2024-07-23
网络出版日期: 2024-08-14
基金资助
安徽省重点研究与开发计划项目(202104j07020001);安徽省重点研究与开发计划项目(2022e07020003);安徽省第十四批“115”产业创新团队资助项目
Establishment of multienzyme isothermal rapid amplification assay combined with fluorescent probe for rapid detection of Schistosoma japonicum gene
Received date: 2024-04-07
Revised date: 2024-07-23
Online published: 2024-08-14
Supported by
Key Research and Development Program of Anhui Province(202104j07020001);Key Research and Development Program of Anhui Province(2022e07020003);Key Specialty Construction Funding Project of Medical Hygiene in Anhui Province and the 14th Batch of “115” Industrial Innovation Team Funding Projects in Anhui Province
目的 结合多酶恒温快速扩增技术(MIRA)和荧光探针法,建立一种快速检测日本血吸虫特异性基因片段的方法。 方法 以日本血吸虫非长末端重复序列反转录转座子(SjR2)片段为靶序列,设计并合成3对引物和荧光探针,建立荧光MIRA法反应体系,PCR检测,绘制扩增曲线。比较并筛选扩增效果较好的引物对和探针浓度;通过检测1 fg/μl、5 fg/μl、10 fg/μl、100 fg/μl、1 pg/μl和10 pg/μl等不同浓度的日本血吸虫成虫基因组DNA,评价该法的灵敏度;提取卫氏并殖吸虫、华支睾吸虫、东方次睾吸虫、颚口线虫及刚地弓形虫基因组DNA,并用荧光MIRA法检测,评价其特异度。耳缘静脉采集兔血,分离血清,制备含1 fg、5 fg、10 fg、100 fg、1 pg和10 pg日本血吸虫成虫DNA的兔模拟阳性血清并进行DNA提取,以荧光MIRA法检测,评估该法检测血清中日本血吸虫靶基因的最低限度。 结果 引物对1(SjR2-1)的扩增效率较高,在反应第22个循环时(11 min)扩增出荧光产物,荧光值最高达170 000;探针量为0.6 μl/反应时具有较好的荧光强度和低荧光背景。建立的荧光MIRA法在39 ℃时第26个循环(13 min)时扩增出荧光产物,检测血吸虫成虫DNA的最低检出限为1 fg/反应。扩增产物电泳显示,血吸虫基因组DNA模板含量为10 pg、1 pg、100 fg、10 fg时,均有电泳条带出现,电泳显示的检测限为10 fg/反应,产物大小为186 bp。仅含有日本血吸虫成虫DNA的反应管出现荧光扩增曲线,检测卫氏并殖吸虫、华支睾吸虫、东方次睾吸虫、颚口线虫及刚地弓形虫等基因组DNA未出现明显荧光扩增曲线。不同浓度的血吸虫DNA模拟阳性血清中,DNA含量为1 pg和10 pg时,有阳性扩增曲线出现,最快于第16个循环(8 min内)即出现阳性荧光扩增信号,该法检测模拟阳性血清中血吸虫成虫DNA的最低检测限为1 pg/反应。 结论 成功建立了一种检测日本血吸虫特异性基因片段的荧光MIRA法,该法反应快速、敏感性高、特异性强,具有潜在的日本血吸虫病诊断应用价值。
关键词: 日本血吸虫; 多酶恒温快速扩增技术; 荧光探针; 基因片段
章乐生 , 王旗 , 汪峰峰 , 朱海 , 李清越 , 马晓荷 , 汪敏 , 王毓洁 , 汪天平 , 操治国 . 多酶恒温快速扩增技术结合荧光探针快速检测日本血吸虫基因方法的建立[J]. 中国寄生虫学与寄生虫病杂志, 2024 , 42(4) : 481 -486 . DOI: 10.12140/j.issn.1000-7423.2024.04.009
Objective To develop a method for rapid detection of specific gene fragments of Schistosoma japonicum using a multienzyme isothermal rapid amplification (MIRA) combined with fluorescent probing. Methods The S. japonicum non-long terminal repeat retrotransposons (SjR2) fragment was selected as the target sequence, and three pairs of primers and fluorescent probes were designed and synthesized to establish a fluorescent MIRA reaction system, with which, fluorescence quantitative PCR was performed, and amplification curves were plotted to compare and screen out primer pairs and probe concentrations with better amplification effects. To evaluate the sensitivity of this method, adult S. japonicum genomic DNA at different concentrations of 1 fg/μl, 5 fg/μl, 10 fg/μl, 100 fg/μl, 1 pg/μl, and 10 pg/μl, were detected, respectively. To evaluate the methd specificity, genomic DNA extracted from Paragonimus westermani, Clonorchis sinensis, C. orientalis, Gnathostoma, and Toxoplasma gondii were examined using the fluorescence MIRA method. To assess the detactable limit of serum gene DNA of the method, rabbit blood was collected from the ear vein for separating serum to prepare simulated positive serum samples containing 1 fg, 5 fg, 10 fg, 100 fg, 1 pg, and 10 pg DNA of adult S. japonicum, which were detected using the fluorescence MIRA method. Results The amplification efficiency of primer pair 1 (SjR2-1) was high, and the fluorescent product was seen at the 22nd cycle (11 min) with a maximum fluorescence value of 170 000; the probe amount at 0.6 μl/reaction displayed better fluorescence intensity with low fluorescence background. The fluorescent products were amplified at the 26th cycle (13 min) at 39 ℃. The minimum detection limit of the established fluorescence MIRA method for detecting Schistosoma adult worm DNA was 1 fg/reaction. The electrophoresis of amplification products showed that electrophoresis bands appeared when the template of Schistosoma genomic DNA was 10 pg, 1 pg, 100 fg, and 10 fg, respectively, and the detection limit was 10 fg/reaction and the product size was 186 bp. The reaction tube containing only the DNA of S. japonicum adult worm showed fluorescence amplification curves, while no significant fluorescence amplification curves were observed in the detection of genomic DNA of P. westermani, C. sinensis, C. orientalis, Gnathostomum and T. gondii. When the DNA content in the simulated positive serum of different concentrations of Schistosoma was 1 pg and 10 pg, positive amplification curves appeared, and positive fluorescence amplification signals appeared as early as the 16th cycle (within 8 min). The minimum detection limit for detecting Schistosoma adult worm DNA in simulated positive serum by this method was 1 pg/reaction. Conclusion A fluorescent MIRA method detecting specific gene fragments of S. japonicum was successfully developed. The method is rapid, sensitive and specific in use, showing potential diagnostic application value for schistosomiasis japonica.
| [1] | Zhang LJ, He JY, Yang F, et al. Progress of schistosomiasis control in People’s Republic of China in 2022[J]. Chin J Schisto Control, 2023, 9(3): 217-224, 250. (in Chinese) |
| (张利娟, 何君逸, 杨帆, 等. 2022年全国血吸虫病防治进展[J]. 中国血吸虫病防治杂志, 2023, 9(3): 217-224, 250.) | |
| [2] | Xu J, Wang Q, Yang K, et al. High-quality acceleration of the Chinese national schistosomiasis elimination programme to advance the building of healthy China[J]. Chin J Schisto Control, 2024, 36(1): 1-6. (in Chinese) |
| (许静, 王强, 杨坤, 等. 高质量推进血吸虫病消除进程助力健康中国建设[J]. 中国血吸虫病防治杂志, 2024, 36(1): 1-6.) | |
| [3] | Lin DD, Liu YM, Hu F, et al. Evaluation on application of common diagnosis methods for schistosomiasis japonica in endemic areas of China Ⅲ analysis and evaluation of underestimation of prevalence of Schistosoma japonicum infection by routine Kato-Katz technique[J]. Chin J Schisto Control, 2011, 23(6): 642-647. (in Chinese) |
| (林丹丹, 刘跃民, 胡飞, 等. 日本血吸虫病常用诊断方法应用价值的评估ⅢKato-Katz法低估疫区人群血吸虫感染率的分析与评价[J]. 中国血吸虫病防治杂志, 2011, 23(6): 642-647.) | |
| [4] | Kumagai T, Furushima-Shimogawara R, Ohmae H, et al. Detection of early and single infections of Schistosoma japonicum in the intermediate host snail, Oncomelania hupensis, by PCR and loop-mediated isothermal amplification (LAMP) assay[J]. Am J Trop Med Hyg, 2010, 83(3): 542-548. |
| [5] | Zhou L, Liang B, Zhao YY, et al. Fluorescent quantitative real-time PCR for detection of Schistosoma japonicum[J]. Chin J Parasitol Parasit Dis, 2008, 26(4): 299-303. (in Chinese) |
| (周立, 梁冰, 赵友云, 等. 实时荧光定量PCR法检测日本血吸虫[J]. 中国寄生虫学与寄生虫病杂志, 2008, 26(4): 299-303.) | |
| [6] | Chen JH, Wen LY, Zhang XZ, et al. Development of a PCR assay for detecting Schistosoma japonicum-infected Oncomelania hupensis[J]. Chin J Parasitol Parasit Dis, 2006, 24(3): 204-207. (in Chinese) |
| (陈军虎, 闻礼永, 张旭照, 等. 检测日本血吸虫感染性钉螺PCR方法的建立[J]. 中国寄生虫学与寄生虫病杂志, 2006, 24(3): 204-207.) | |
| [7] | Xia CM, Rong R, Lu ZX, et al. Schistosoma japonicum: a PCR assay for the early detection and evaluation of treatment in a rabbit model[J]. Exp Parasitol, 2009, 121(2): 175-179. |
| [8] | He P, Gordon CA, Williams GM, et al. Real-time PCR diagnosis of Schistosoma japonicum in low transmission areas of China[J]. Infect Dis Poverty, 2018, 7(1): 8. |
| [9] | Guo JJ, Zheng HJ, Xu J, et al. Sensitive and specific target sequences selected from retrotransposons of Schistosoma japonicum for the diagnosis of schistosomiasis[J]. PLoS Negl Trop Dis, 2012, 6(3): e1579. |
| [10] | Qin ZQ, Xu J, Feng T, et al. Field evaluation of a loop-mediated isothermal amplification (LAMP) platform for the detection of Schistosoma japonicum infection in Oncomelania hupensis snails[J]. Trop Med Infect Dis, 2018, 3(4): 124. |
| [11] | Zhao S, Li T, Yang K, et al. Establishment of a recombinase-aided isothermal amplification technique to detect Schistosoma japonicum specific gene fragments[J]. Chin J Schisto Control, 2018, 30(3): 273-277, 306. (in Chinese) |
| (赵松, 李婷, 杨坤, 等. 重组酶介导的日本血吸虫特异性基因片段核酸等温扩增检测方法的建立[J]. 中国血吸虫病防治杂志, 2018, 30(3): 273-277, 306.) | |
| [12] | Wang SL, Deng WP, Li YL, et al. Establishment of recombinase polymerase amplification technique for rapid detection of Schistosoma japonicum nucleic acid[J]. Chin J Parasitol Parasit Dis, 2020, 38(3): 293-298. (in Chinese) |
| (王盛琳, 邓王平, 李银龙, 等. 重组酶聚合酶扩增技术快速检测日本血吸虫核酸方法的建立[J]. 中国寄生虫学与寄生虫病杂志, 2020, 38(3): 293-298.) | |
| [13] | Li YL, Dang H, Guo SY, et al. National surveillance of Oncomelania hupensis in China, 2015-2019[J]. Chin J Schisto Control, 2021, 33(2): 127-132. (in Chinese) |
| (李银龙, 党辉, 郭苏影, 等. 2015—2019年全国血吸虫病监测点钉螺监测结果分析[J]. 中国血吸虫病防治杂志, 2021, 33(2): 127-132.) | |
| [14] | Li SJ, Jiang HT, Wu YL. Establishment of a rapid detection method for Vibrio cholerae colloidal gold test strips based on MIRA technology[J]. Jiangsu Agric Sci, 2021, 49(24): 167-171. (in Chinese) |
| (李盛杰, 江海涛, 吴雨龙. 基于MIRA技术的霍乱弧菌胶体金试纸条快速检测方法的建立[J]. 江苏农业科学, 2021, 49(24): 167-171.) | |
| [15] | Wang SJ, Fan YL, Feng Z, et al. Multi-enzyme isothermal rapid amplification assay for the detection of Escherichia coli O157:H7[J]. Shanghai J Prev Med, 2022, 34(6): 511-518. (in Chinese) |
| (王淑娟, 范一灵, 冯震, 等. 多酶恒温核酸快速扩增法检测大肠杆菌0157:H7[J]. 上海预防医学, 2022, 34(6): 511-518.) | |
| [16] | Heng PF, Shi B, Li DM, et al. Rapid visualization molecular fluorescence detection of methicillin-resistant Staphylococcus aureus using the multiplex MIRA-qPCR method[J]. Biotechnol J, 2023, 18(12): e2300200. |
| [17] | Laha T, Brindley PJ, Smout MJ, et al. Reverse transcriptase activity and untranslated region sharing of a new RTE-like, non-long terminal repeat retrotransposon from the human blood fluke, Schistosoma japonicum[J]. Int J Parasitol, 2002, 32(9): 1163-1174. |
| [18] | Sun K, Xing WW, Yu XL, et al. Recombinase polymerase amplification combined with a lateral flow dipstick for rapid and visual detection of Schistosoma japonicum[J]. Parasit Vectors, 2016, 9(1): 476. |
| [19] | Chen H, Sun C, Wang Y, et al. Rapid detection of SARS-CoV-2 using duplex reverse transcription-multienzyme isothermal rapid amplification in a point-of-care testing[J]. Front Cell Infect Microbiol, 2021, 11: 678703. |
| [20] | Sun ML, Lai HY, Chong NY, et al. Simple and feasible detection of hepatitis B virus via combination of multienzyme isothermal rapid amplification and lateral flow dipstick strip[J]. Front Mol Biosci, 2021, 8: 763079. |
| [21] | Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium. The Schistosoma japonicum genome reveals features of host-parasite interplay[J]. Nature, 2009, 460(7253): 345-351. |
| [22] | Xu J, Rong R, Zhang HQ, et al. Sensitive and rapid detection of Schistosoma japonicum DNA by loop-mediated isothermal amplification (LAMP)[J]. Int J Parasitol, 2010, 40(3): 327-331. |
| [23] | Xing WW, Yu XL, Feng JT, et al. Field evaluation of a recombinase polymerase amplification assay for the diagnosis of Schistosoma japonicum infection in Hunan Province of China[J]. BMC Infect Dis, 2017, 17(1): 164. |
| [24] | Deng WP, Hong QH, Xu B, et al. Development and preliminary evaluation of a rapid visualization detection method for circulating nucleic acids of Schistosoma japonicum based on RPA-LFD[J]. Chin J Parasitol Parasit Dis, 2020, 38(3): 286-292. (in Chinese) |
| (邓王平, 洪清华, 徐斌, 等. 基于RPA-LFD的日本血吸虫循环核酸快速可视化检测方法的建立及初步评价[J]. 中国寄生虫学与寄生虫病杂志, 2020, 38(3): 286-292.) |
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