论著

基于环介导等温扩增微流控芯片技术快速检测蚊媒携带登革病毒方法的建立

  • 姜宁 ,
  • 白洁 ,
  • 李平 ,
  • 单文琪 ,
  • 周秋明 ,
  • 董昊炜 ,
  • 袁浩 ,
  • 陶峰 ,
  • 李翔宇 ,
  • 马雅军 ,
  • 彭恒
展开
  • 1 上海理工大学健康科学与工程学院,上海 200093
    2 中国人民解放军海军军医大学基础医学院病原生物学教研室,上海 200433
    3 海口市疾病预防控制中心,海南海口 571100
    4 中国人民解放军海军军医大学海医系,上海 200433
姜宁(1999—),男,硕士研究生,从事媒介生物防控研究。E-mail:jiangning990921@163.com
* 彭恒(1982—),男,博士,副教授,从事病原生物学研究。E-mail:pengheng0923@126.com

收稿日期: 2024-01-10

  修回日期: 2024-02-22

  网络出版日期: 2024-04-11

基金资助

上海市产业协同创新项目(2021-cyxt1-kj06);国家重点研发计划(2022YFC3103000);国家自然科学基金(31970445)

Establishment of a rapid detection method of mosquito-borne dengue virus based on loop-mediated isothermal amplification microfluidic chip technology

  • JIANG Ning ,
  • BAI Jie ,
  • LI Ping ,
  • SHAN Wenqi ,
  • ZHOU Qiuming ,
  • DONG Haowei ,
  • YUAN Hao ,
  • TAO Feng ,
  • LI Xiangyu ,
  • MA Yajun ,
  • PENG Heng
Expand
  • 1 School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
    2 Department of Pathogenic Biology, Basic Medical College, Naval Medical University, Shanghai 200433, China
    3 Haikou Center for Disease Control and Prevention, Haikou 571100, Hainan, China
    4 Department of Naval Medicine, Naval Medical University, Shanghai 200433, China

Received date: 2024-01-10

  Revised date: 2024-02-22

  Online published: 2024-04-11

Supported by

Shanghai Industrial Collaborative Innovation Project(2021-cyxt1-kj06);National Key Research and Development Program(2022YFC3103000);National Natural Science Foundation of China(31970445)

摘要

目的 建立一种基于环介导等温扩增(LAMP)微流控芯片技术的快速检测蚊媒携带登革病毒的方法。方法 根据登革病毒衣壳蛋白(C)、前膜蛋白(prM)和非结构蛋白2A(NS2A)基因片段构建pUC-GW-Amp-CprM和pUC-GW-Amp-NS2A质粒,设计多组环介导等温扩增特异性引物组。制备LAMP微流控芯片,以靶基因质粒、登革病毒核酸为模板进行检测,根据起峰时间、相对荧光单位、假阳性、重复实验稳定性、检测灵敏度等指标筛选最优引物组。用最优引物组分别检测埃及伊蚊、白纹伊蚊等主要登革热传播媒介和常见的致倦库蚊、中华按蚊、摇蚊的cDNA,并与寨卡病毒、流行性乙型脑炎病毒、恶性疟原虫、黄热病毒等常见蚊媒传播病原体进行交叉检测,评价LAMP法的特异性。评价LAMP法检测CprM和NS2A靶基因质粒的灵敏度,分别与PCR、实时荧光定量PCR(qPCR)检测结果进行比较。用登革病毒RNA与传播媒介埃及伊蚊、白纹伊蚊RNA分别以1∶10、1∶100和1∶1 000混合,模拟媒介携带登革病毒的样品进行LAMP微流控芯片检测。对采集自宁德市三都岛、西安市、上海朱家角、长兴岛和五角场等5地的白纹伊蚊的cDNA进行检测。结果 引物组筛选结果显示,CprMG2和NS2AG1引物组起峰时间早,相对荧光单位高,灵敏度最高,为最优引物组。CprMG2引物组可检测浓度低至10-6 ng/μl的pUC-GW-Amp-CprM质粒,最低检测限为1.3 × 103拷贝;NS2AG1引物组可检测浓度低至10-9 ng/μl的pUC-GW-Amp-NS2A质粒,最低检测限为1拷贝。最优引物组CprMG2、NS2AG1对埃及伊蚊、白纹伊蚊、中华按蚊、致倦库蚊、摇蚊等蚊虫cDNA无非特异性扩增,与寨卡病毒、流行性乙型脑炎病毒、恶性疟原虫、黄热病毒核酸无交叉反应。LAMP微流控芯片检测CprM靶基因的最低检测限为1.3 × 103拷贝,较PCR检测的最低检测限(1.3 × 104拷贝)高1个数量级;LAMP微流控芯片检测CprM和NS2A靶基因的最低检测限分别为1.3 × 103拷贝、1拷贝,与qPCR检测的最低检测限(1.3 × 103拷贝、1拷贝)相当。LAMP微流控芯片检测模拟现场样品的结果显示,CprMG2可检出与埃及伊蚊、白纹伊蚊RNA 1∶10、1∶100和1∶1 000混合的登革病毒RNA,NS2AG1最低可检出1∶100混合的登革病毒,特异性均为100%。LAMP微流控芯片检测5地现场采集白纹伊蚊的结果均为阴性。结论 建立了基于LAMP微流控芯片检测登革病毒的方法,该法敏感性和特异性高,检测时间短,可用于现场蚊媒携带登革病毒的检测。

本文引用格式

姜宁 , 白洁 , 李平 , 单文琪 , 周秋明 , 董昊炜 , 袁浩 , 陶峰 , 李翔宇 , 马雅军 , 彭恒 . 基于环介导等温扩增微流控芯片技术快速检测蚊媒携带登革病毒方法的建立[J]. 中国寄生虫学与寄生虫病杂志, 2024 , 42(2) : 234 -241 . DOI: 10.12140/j.issn.1000-7423.2024.02.015

Abstract

Objective To establish a loop-mediated isothermal amplification (LAMP) based microfluidic chip technology for the rapid detection of dengue virus in mosquitoes. Methods According to the gene fragments encoding dengue virus capsid protein (C), pro-membrane protein (prM) and non-structural protein 2A (NS2A), plasmids pUC-GW-Amp-CprM and pUC-GW-Amp-NS2A were constructed, and specific primer sets for multi-group loop-mediated isothermal amplification were designed. The LAMP microfluidic chip was prepared for amplification with the target gene plasmids and dengue virus nucleic acid used as templates. Optimal primer combinations were screened according to the peak time, fluorescence intensity, false positivity, reproducibility, and sensitivity of the assay. The optimal primer combinations were used to detect the cDNAs of major dengue vectors, including Aedes aegypti and A. albopictus and commonly seen Culex quinquefasciatus, Anopheles sinensis, and Chironomus. The combinations were also used for cross-examination with common mosquito-borne pathogens, such as Zika virus, epidemic B encephalitis virus, Plasmodium falciparum, and Yellow fever virus to evaluate the specificity of the LAMP assay. The LAMP assay sensitivity for detection of pUC-GW-Amp-CprM and pUC-GW-Amp-NS2A plasmids was evaluated by comparing with the results of PCR and qPCR, respectively. Dengue virus RNA was mixed with their vector A. aegypti and A. albopictus RNA at 1 ∶ 10, 1 ∶ 100, and 1 ∶ 1 000, respectively, to simulate samples of vector carrying dengue viruses for LAMP microfluidic microarray detection. The A. albopictus cDNA samples collected from five locations, including Sandu Island in Ningde City, Xi’an City, Zhujiajiao, Changxing Island and Wujiaochang in Shanghai, were examined. Results The primer screening results suggested that the CprMG2 and NS2AG1 primers were identified as the optimal primer combinations because of their early peak onset, high relative fluorescence unit and highest sensitivity. Among them, CprMG2 can detect pUC-GW-Amp-CprM plasmid templates at concentrations as low as 10-6 ng/μl, with a minimum detection limit of 1.3 × 103 copies, and NS2AG1 can detect pUC-GW-Amp-NS2A plasmid templates at concentrations as low as 10-9 ng/μl, with a minimum detection limit of 1 copy. The optimal primer combinations CprMG2 and NS2AG1 showed no unspecifical amplification of arthropod cDNAs of A. aegypti and A. albopictus and other common arthropods, including C. quinquefasciatus, An. sinensis, and Chironomus. They did not cross-react with the nucleic acids of the Zika virus, encephalitis B virus, P. falciparum and Yellow fever virus. The lowest detection limit of CprM target gene detected by LAMP microfluidic chip was 1.3 × 103 copies, which was ten folds more sensitive than that of PCR (1.3 × 104 copies); the lowest detection limits of CprM and NS2A target genes detected by LAMP microfluidic chip were 1.3 × 103 and 1 copies, which were equivalent to those of qPCR (1.3 × 103 and 1 copies). The LAMP microfluidic chip testing results on the simulated field samples showed that CprMG2 could detect 1 ∶ 10, 1 ∶ 100 and 1 ∶ 1 000 dilutions of the virus, and NS2AG1 could detect a minimum of 1 ∶ 100 dilutions of the virus, with a specificity of 100%. LAMP microfluidic chip testing of A. albopictus collected in the five field sites yielded negative results. Conclusion A LAMP microfluidic chip method for dengue virus detection was established. The method shows high sensitivity and specificity, short detection time, and can be used for field detection of mosquito vectors cattying dengue virus.

参考文献

[1] Tamura T, Zhang JY, Madan V, et al. Generation and characterization of genetically and antigenically diverse infectious clones of dengue virus serotypes 1-4[J]. Emerg Microbes Infect, 2022, 11(1): 227-239.
[2] Teixeira GS, Andrade AA, Torres LR, et al. Suppression of TGF-β/Smad2 signaling by GW788388 enhances DENV-2 clearance in macrophages[J]. J Med Virol, 2022, 94(9): 4359-4368.
[3] Harvie S, Nor Aliza AR, Lela S, et al. Detection of dengue virus serotype 2 (DENV-2) in population of Aedes mosquitoes from Sibu and Miri divisions of Sarawak using reverse transcription polymerase chain reaction (RT-PCR) and semi-nested PCR[J]. Trop Biomed, 2020, 37(2): 258-272.
[4] Fritsch H, Moreno K, Lima IAB, et al. Phylogenetic reconstructions reveal the circulation of a novel dengue virus-1Ⅴ clade and the persistence of a dengue virus-2 Ⅲ genotype in northeast Brazil[J]. Viruses, 2023, 15(5): 1073.
[5] Sy AK, Koo C, Privaldos KJR, et al. Genetic diversity and dispersal of DENGUE virus among three main island groups of the Philippines during 2015-2017[J]. Viruses, 2023, 15(5): 1079.
[6] Rodríguez-Aguilar ED, Martínez-Barnetche J, Juárez-Palma L, et al. Genetic diversity and spatiotemporal dynamics of DENV-1 and DENV-2 infections during the 2012-013 outbreak in Mexico[J]. Virology, 2022, 573: 141-150.
[7] Hernández-García E, Mu?oz ML, David RE, et al. Epidemiological implications of the genetic diversification of dengue virus (DENV) serotypes and genotypes in Mexico[J]. Infect Genet Evol, 2020, 84: 104391.
[8] Xiong YQ, Chen Q. Epidemiology of dengue fever in China since 1978[J]. J South Med Univ, 2014, 34(12): 1822-1825. (in Chinese)
  (熊益权, 陈清. 1978—2014年我国登革热的流行病学分析[J]. 南方医科大学学报, 2014, 34(12): 1822-1825.)
[9] Li DY, Lu M, Zhu HL, et al. Transmission and evolution of Dengue virus type Ⅰ in China[J]. Chin J Biol, 2021, 34(5): 522-527. (in Chinese)
  (李代英, 鲁明, 朱海莲, 等. Ⅰ型登革病毒在中国的传播及进化[J]. 中国生物制品学杂志, 2021, 34(5): 522-527.)
[10] Notomi T, Okayama H, Masubuchi H, et al. Loop-mediated isothermal amplification of DNA[J]. Nucleic Acids Res, 2000, 28(12): E63.
[11] Tomar PS, Patel S, Dash PK, et al. Simple and field amenable loop-mediated isothermal amplification-lateral flow dipstick assay for detection of West Nile virus in human clinical samples[J]. J Appl Microbiol, 2022, 133(6): 3512-3522.
[12] Soroka M, Wasowicz B, Rymaszewska A. Loop-mediated isothermal amplification (LAMP): the better sibling of PCR?[J]. Cells, 2021, 10(8): 1931.
[13] Obande GA, Banga Singh KK. Current and future perspectives on isothermal nucleic acid amplification technologies for diagnosing infections[J]. Infect Drug Resist, 2020, 13: 455-483.
[14] Cao GJ, Kong JL, Xing ZF, et al. Rapid detection of CALR type 1 and type 2 mutations using PNA-LNA clamping loop-mediated isothermal amplification on a CD-like microfluidic chip[J]. Anal Chim Acta, 2018, 1024: 123-135.
[15] Mao R, Ge G, Wang Z, et al. A multiplex microfluidic loop-mediated isothermal amplification array for detection of malaria-related parasites and vectors[J]. Acta Trop, 2018, 178: 86-92.
[16] Ministry of Health of the People’s Republic of China. Diagnostic criteria and principle of management of dengue fever: WS 216—2008[S]. Beijing: Standards Press of China, 2008. (in Chinese)
  (中华人民共和国卫生部. 登革热诊断标准: WS 216—2008[S]. 北京: 中国标准出版社, 2008.)
[17] Hu SF, Li M, Zhong LL, et al. Development of reverse-transcription loop-mediated isothermal amplification assay for rapid detection and differentiation of dengue virus serotypes 1-4[J]. BMC Microbiol, 2015, 15: 265.
[18] Lu X, Li XB, Mo ZY, et al. Rapid identification of Chikungunya and Dengue virus by a real-time reverse transcription-loop-mediated isothermal amplification method[J]. Am J Trop Med Hyg, 2012, 87(5): 947-953.
[19] World Health Organization. Dengue and severe dengue[R]. Geneva: WHO, 2023.
[20] Mattar S, Guzmán C, Figueiredo LT. Diagnosis of hantavirus infection in humans[J]. Expert Rev Anti Infect Ther, 2015, 13(8): 939-946.
[21] Philip Samuel P, Tyagi BK. Diagnostic methods for detection & isolation of dengue viruses from vector mosquitoes[J]. Indian J Med Res, 2006, 123(5): 615-628.
[22] Pongsiri P, Praianantathavorn K, Theamboonlers A, et al. Multiplex real-time RT-PCR for detecting chikungunya virus and dengue virus[J]. Asian Pac J Trop Med, 2012, 5(5): 342-346.
[23] Dauner AL, Mitra I, Gilliland T Jr, et al. Development of a pan-serotype reverse transcription loop-mediated isothermal amplification assay for the detection of dengue virus[J]. Diagn Microbiol Infect Dis, 2015, 83(1): 30-36.
[24] Lau YL, Lai MY, Teoh BT, et al. Colorimetric detection of dengue by single tube reverse-transcription-loop-mediated isothermal amplification[J]. PLoS One, 2015, 10(9): e0138694.
文章导航

/

〈 〉